Synthetic Biology (the engineering of biology) is the application of the engineering principles to biology in order to build synthetic biological systems. This is a new and fascinating interdisciplinary field (born in 2000 in MIT Artificial Intelligence Lab), where engineers, physicists, and computer scientists have a new opportunity to apply their engineering concepts and tools: Biology is the new hardware and software that can be programmed.

In our group we address the following research questions:

  1. Biological information processing: How cells communicate, process biological signals and take decisions?
  2. Synthetic Biology and DNA Computing:  How can we design new DNA/RNA Computing devices able to operate in vivo?
  3. Artificial Intelligence in vivo: How to use Artificial Intelligence ideas to program smart living cellular computers? How to engineer a programmable biocircuit able to learn to classify living cells? 
  4. Artificial Intelligence in Biology: How to apply evolutionary computing and deep learning tools for the design of better biocircuits and selection of biomarkers?
  5. Multicellular analog computing: Most biocircuits developed so far are based on Boolean algebra and use a digital/binary abstraction to operate with biological signals. How could we design new robust analog and multicellular biocircuits?
  6. Individual/agent based models (IBM) for multicellular systems biology: How to simulate interactions between bacteria in a microbial ecosystem? How to use an IBM to help microbiologists to reverse engineer the microbiota and forward engineer probiotics? Can we reprogram the microbiota? How to predict antibiotic resistance and horizontal gene transfer spread in a microbial population using an IBM?  
  7. Bio-design automation and Programmable Biology: We produce software to simulate multicellular genetic circuits (gro simulator) and to automatize biology experiments (BioBlocks language). Computer scientists have portable laptops. Can we engineer portable labs for running biological experiments? We are programming open-source portable biolabs using BioBlocks. 
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Our FP7 EU FET-Proactive research projects:

PLASWIRESwww.plaswires.eu 

EVOPROG: www.evoprog.eu

PhD positions available in LIA group. If you are a great programmer (an engineer or physicist) that likes biology and wants to program cells and DNA, code biology or engineer life contact us (candidates should send by email: CV, academic transcripts and a motivation letter). We love people passionate about research that wants to deep into the unknown.

iGEM: We want to assemble a team (biotechnologists + computer scientists) in UPM for next iGEM competitions. Do you want to join us?

Introduction to Synthetic Biology

You may find some documents in this section to introduce the reader to Synthetic Biology:

Description of PLASWIRES synthetic biology FP7 FET research project. Report included in UPM Journal, n.28, June 2014. Spanish version: http://www.upm.es/institucional/UPM/CanalUPM/Revista

Some introductory material to Synthetic Biology

If you prefer to read:

If you prefer to watch:

Videos: